Gene MTMR1
MTMR1
Classification
Phosphatases were first clustered by sequence similarity in the phosphatase domain, and additional information from domains outside of the catalytic domain, from evolutionary conservation, and from known functions was added. The result is a hybrid classification, in which no criterion is universally satisfied, but aims to be of practical use to a range of phosphatase interests. The classification grows as new phosphatomes are sequenced.
Protein domain
Protein domains of MTMR1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit phosphatase group/family/subfamily, which is helpful to understand the relationship between phosphatases. Transmembrane region is predicted by TMHMM 2.0. Visualized by pviz.
Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking. View complete domain list.
| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| GRAM | MTMR1.AA | GRAM | 93-161 | 18 | 1.9e-13 | 51.93 | SMART | 1-80 (80) | Show / Hide |
Range on Protein: 93-161 Range on HMM: 1-80/80 Sequence Identity: 18% (15 aa) AQM-EEAPLFPGESIKAI-VKDVMYICPFMG----AVSGTLTVTDFKLYFKN-VERDPHF----ILDVPLGVISRVEKIG .. .. .| |.| ... .|.| | |.... | |.. .......|. ..... . ...|...|.|.||.. EKFRQHFKLPPNEKLINDCKKEVTYSCYLWRTYDIPVQGHMYISNNHICFCSNMFGWMTCPQYYKVVIPWADITRIEKMT |
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| Myotub-related | MTMR1.AA | Myotub-related | 255-372 | 59 | 2.2e-73 | 254.88 | Pfam | 1-121 (121) | Show / Hide |
Range on Protein: 255-372 Range on HMM: 1-121/121 Sequence Identity: 59% (72 aa) YEFCDTYPAIIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESQATITRCSQPLVGPNDKRCKEDEKYLQTIMDANA---QSHKLIIFDARQNSVADTN ||.|.||||..|||.|. ||.| |||.||..||.|||.|.|.|..|.|.||||||||....|||||||..| ||.||| ||.|..|.|||....| .| YEICPTYPAKLVVPKSISDDELKKVAKFRSWGRFPVLCWRHQENGAVICRCSQPLVGWWGWRCKEDEKLVQAIMKANADMIQSRKMYIVDARPYTNAMAN KTKGGGYESESAYPNAELVFL ..||||||.|..|||.|.||. RAKGGGYENEEHYPNWEFVFM |
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| GRAM | MTMR1.AA | GRAM | 104-161 | 17 | 7.4e-13 | 49.02 | Pfam | 1-78 (78) | Show / Hide |
Range on Protein: 104-161 Range on HMM: 1-78/78 Sequence Identity: 17% (14 aa) ESIKAIVK---------DVM----YICPFMGA-----VSGTLTVTDFKLYFKN-VERDPH-FILDVPLGVISRVEKIG | .....| . . |.|..... |.|....|.. ..|.. ...... . ...|...|.||||.. EKFRKHFKDPLPPNEKLIMDCNVTYSCCLWRPFTKIPVQGRMYITNHHVCFYSDKFGWETYYKMVIPWNDITRVEKMQ |
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| Phosphatase | MTMR1.AA | Subfamily.MTMR1.PD | 386-534 | 81 | 1.7e-91 | 293.1 | In-house | 1-149 (149) | Show / Hide |
Range on Protein: 386-534 Range on HMM: 1-149/149 Sequence Identity: 81% (122 aa) KLKEIVYPSIDEARWLSNVDGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLTSLAMLMLDSYYRTIKGFETLVEKEWISFGHRFALRV ||||||||||||..|||... |.|||.|...||||||||||.|| ||||||||||||||||||||||||.||||||||||||.|.||||.||||.|| |. klkeivypsideskwlsaleetkwlehiklilagavriadkvesektsvvvhcsdgwdrtaqltslamllldsyyrtikgfevliekewlsfghkfaeri GHGNDNHADADRSPIFLQFVDCVWQMTRQFPSAFEFNELFLITILDHLY |||..|||||||||.||||.|||||.|||||.|||||| |||||||||| ghgdknhadadrspvflqfidcvwqvtrqfptafefneeflitildhly |
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| Phosphatase | MTMR1.AA | Family.Myotubularin.PD | 396-534 | 67 | 1e-71 | 228.6 | In-house | 3-141 (141) | Show / Hide |
Range on Protein: 396-534 Range on HMM: 3-141/141 Sequence Identity: 67% (93 aa) DEARWLSNVDGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLTSLAMLMLDSYYRTIKGFETLVEKEWISFGHRFALRVGHGNDNHADA .|..|||... |.|||.|..||..||.|..|.|. ||||.|||||||||||||||||.|.||.|||||.||| |.||||.||||.|||.|||........ eekkwlselestkWlehiklllkaavkivekvekektsvlvhcsdGWdrtaqltslaqllldpyyrtieGfevliekeWlsfGhkfaerlghgdksesee DRSPIFLQFVDCVWQMTRQFPSAFEFNELFLITILDHLY |||.||||.|||.|.|.|||.|||||| |||.|||||| ersPvflqfidcvyqltkqfptafefnesflikildhly |
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| Phosphatase | MTMR1.AA | Subfamily.C2-MTMR1.PD | 397-532 | 51 | 6e-57 | 181.0 | In-house | 3-135 (137) | Show / Hide |
Range on Protein: 397-532 Range on HMM: 3-135/137 Sequence Identity: 51% (70 aa) EARWLSNVDGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLTSLAMLMLDSYYRTIKGFETLVEKEWISFGHRFALRVGHGNdnhADAD . .|||... |.|| ||. .| .| || |.| | .||||||||||.||..|| |.|| |||||.|. |.||||..|||.| ||. . . ..| dvqwlsqlestqwlayikavlkaaraiarkveklavsalvhcsdgwdrtsqlvllaqllldpyyrtidglivliekewlafghkfderlggad---svse RSPIFLQFVDCVWQMTRQFPSAFEFNELFLITILDH |||||||.||..|.|.|||||||.. .|. . |. rspiflqfldclyqvtkqfpsafeytarlllklady |
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| Phosphatase | MTMR1.AA | Subfamily.MTMR3.PD | 400-534 | 50 | 1.6e-56 | 179.4 | In-house | 1-135 (135) | Show / Hide |
Range on Protein: 400-534 Range on HMM: 1-135/135 Sequence Identity: 50% (68 aa) WLSNVDGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLTSLAMLMLDSYYRTIKGFETLVEKEWISFGHRFALRVGHGNDNHADADRSP .||... |.||. . .|| ||.... .. . |.||||||||||.|...|| |.|| ||||..||. |||.||..|||.|| |.|||.|.. .|.| flsalektkwlqhlsvllkaavkvvnavdkegrpvlvhcsdgwdrtpqivalakllldpyyrtlegfkvlverewldfghkfadrcghgedsddlnercp IFLQFVDCVWQMTRQFPSAFEFNELFLITILDHLY .|||..|||.|...|||..||||| ||. ...| | vflqwldcvhqlkkqfptsfefneaflvklvqhty |
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| Phosphatase | MTMR1.AA | Subfamily.R_Nematode_3.PD | 420-451 | 48 | 3.4e-08 | 22.3 | In-house | 187-218 (267) | Show / Hide |
Range on Protein: 420-451 Range on HMM: 187-218/267 Sequence Identity: 48% (15 aa) AVRIADKIESGKTSVVVHCSDGWDRTAQLTSL |. .....|. ||.|||||||| |.| | . alelikfveksktpvvVHCsdGisRsatlaai |
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| Phosphatase | MTMR1.AA | PTPc_motif | 386-534 | 13 | 2.9e-07 | 31.16 | SMART | 1-92 (92) | Show / Hide |
Range on Protein: 386-534
Range on HMM: 1-92/92
Sequence Identity: 13% (21 aa)
KLKEIVYPSIDEA-----RWLSNVDGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLTSLAMLMLDSYYRTIKGFETLVEKEWISFGHR
... |.. . . . ||.||.. . ..|||||.|..||... .. |.| .
TVHHYHYTNWPDHVEKDSGVPE----DSILEFIRHVRK--------------PIVVHCSAGCGRTGTFCAIDMMMQQ-----------------------
FALRVGHGNDNHADADRSPIFLQFVDCVWQMTRQFPSAFEFNELFLITILDHLY
. . ..|..| | | ... .| .. . .|.
---------------------VDIFQTVKEMRKQRPGMVQTEEQYIFCYRCILE
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