Phosphatase GeneID AqueP098 - Revision history

Mark at 18:52, 30 September 2015

2015-09-30T18:52:32Z

Mark at 19:02, 28 September 2015

2015-09-28T19:02:59Z

Mark: /* AqueP098 is not identical to AqueP099 */

2015-09-28T19:00:05Z

‎AqueP098 is not identical to AqueP099

Mark: Created page with " ==== AqueP098 is not identical to AqueP099 ==== The protein sequences are identical. BLAST against sponge proteins in [http://metazoa.ensembl.org/Amphimedon_queenslandica/Too..."

2015-09-28T18:57:19Z

Created page with " ==== AqueP098 is not identical to AqueP099 ==== The protein sequences are identical. BLAST against sponge proteins in [http://metazoa.ensembl.org/Amphimedon_queenslandica/Too..."

New page

==== AqueP098 is not identical to AqueP099 ====
The protein sequences are identical. BLAST against sponge proteins in [http://metazoa.ensembl.org/Amphimedon_queenslandica/Tools/Blast/Results?db=core;tl=3PVs6PGqxAp2FklL-2091222 ensemblgenomes.org]. Find two hits, the second one is AqueP099.

Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID

PAC:15701411 Aqu1.202883 Contig6625:2-1862 [Sequence] Forward 196 [Sequence] 1025 1.0E-134 100.0 [Alignment
]
PAC:15710924 Aqu1.212396 Contig12991:41253-43106 [Sequence] Reverse 189 [Sequence] 991 5.3E-130 100.0 [Alignment]

But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical.

← Older revision		Revision as of 19:02, 28 September 2015
Line 10:		Line 10:

	But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical.		But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical.
		+
		+	Genomic Location Overlapping Gene(s) Orientation Length Score E-val %ID
		+	Contig6625:1-1910 [Sequence] Aqu1.202883 Forward 1910 [Sequence] 1910 0.0 100.0 [Alignment]
		+	Contig12991:42040-42533 [Sequence] Aqu1.212396 Reverse 494 [Sequence] 422 0.0 96.4 [Alignment]
		+	Contig12991:41184-41671 [Sequence] Aqu1.212396 Reverse 488 [Sequence] 408 0.0 95.9 [Alignment]
		+	Contig12991:42826-43107 [Sequence] Aqu1.212396 Reverse 282 [Sequence] 246 3.5E-136 96.8 [Alignment]
		+	Contig12991:41753-41978 [Sequence] Aqu1.212396 Reverse 226 [Sequence] 182 5.5E-98 95.1 [Alignment]

	>Contig6625 dna:scaffold scaffold:Aqu1:Contig6625:1:1910:1		>Contig6625 dna:scaffold scaffold:Aqu1:Contig6625:1:1910:1

← Older revision		Revision as of 19:00, 28 September 2015
Line 10:		Line 10:

	But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical.		But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical.
		+
		+	>Contig6625 dna:scaffold scaffold:Aqu1:Contig6625:1:1910:1
		+	GCCCGATCACGGAGTACCACAATTTGCCACTTCGCTCATTAGCTTCATCAAGCGAGTACA
		+	AAAAGATCACAACAAAGATAAAGGCGTGCCACTCATGGTCCACTGCAGTGCTGGTGTGGG
		+	TCGTACTGGCACCTTTATCATGCTGGATATAATGATGGACAGATTGAAACAAGAGGAGTC
		+	CATTAATGTGTATGAGGTACTGAGGCAGTTGAGATCAAAGAGAATGTACATGGTTCAAAC
		+	ACAGGTTAGTGTATATAAGAAATACATGTACATTTATCATTTACATGTACATGCATCTTC
		+	ACTTGTATGTGTGTTAACGATAAAACAAAACTATACCACTTTTTGTTTAGTTATACTAAT
		+	ACATGTACGTGTGCCATTTACATGTATATATAGTTCATGTTTTTACTAGTCAATGCTTAT
		+	AAATCCTTTTCGATTTGTGAAAACATTGTAACCCACTTGCTAATTTCAAATTTTTAAGTT
		+	ATGAACATTTAATTGACTTTTGATTACCTGTGTGTACTCTTCTGTCAAAAATTCTTACAA
		+	AAGAATTTAAAATTTTATGTATGTACATGTATCTTGCATATATTTATATATAATAATTAA
		+	TCTTTTTTATTTTATTATTCATAGGCCCAGTATGTGTTCCTTCATGATGCTTTGGATGAG
		+	TTGACCACTTGTGGTGATACTTCGATAATTGGATCCAACCTGAGAGCTCGTGTCAACAAA
		+	ATGCACAAGATGATTCCAGGAAAGAACATAACTGGATTCCAGGAGCAATATGAGGTATAT
		+	ACATGTAGGGATTAGGGAATCAGTAACTGTATAGCTGGATACTATTAGGTTATACTGTAT
		+	AGTCATTTAATTTGACAGAGACAGCTGGGGATTTTTGGATTACATTTTCAATATTAAATC
		+	ATTGAAGTGCATGTGTACAGAAATTAGTGGGTTTTATAGAAATATGGCACCGCCAAATTA
		+	AAGTACCATGTTTTTCCTTGTTTTGGGATGTATGTAGTACTAATTTAGAAACCACAAGCT
		+	TGCAGGGTTTCCCACAAAGCAAACTTCAGCACTATAGTATGTGTACATTGTGGCATTTGG
		+	AGCAAAGTATTTTTTAAAATTCATTTAAAAAATCCAATTTTGATCGAAATCAACTCAAAC
		+	TTGCTACACAACATAAAAACATGTATATGTATTAGAAAAAATTATAAAAATGGAGAATTC
		+	TTTCCTAGTCATTTTTGGCGAAATTTGGCCAAAGACCCTGTACTATAGTACAGGGTCTTT
		+	GGCCCGATTTCAGAGCAACTTTAAAAATTCGTAAAAAATCTAATTTTGATTTTAATTATC
		+	TCAAACTTTCTACGCAACATAAGAACATGTAAATGCATCAGAAAAAATTATAAAAATGAA
		+	AAATTTTCTCCTAGTCATTTTTGGCAAAATGCCTGTACTATAGTACAGGGTTTTTGGCCC
		+	AATTTAGTTGTACACATAAATATCATTGCATGACCATTTGCTGCATAATATAAGATTTTA
		+	CATAAGACTTTTAAGTCACACGATAATTTGTATTATAATATTTTGTCCCCTTGTAGTTAT
		+	TGGATCAGGTTGGATACAAACCCAGTGAAATGATGTACTCTGATGGTACTACTACTGTTA
		+	ATGTACCCAAGAACAGATACCCTGAAATTGTACCATGTAAGTACATACATGTAATACCAG
		+	AATAATACATATGTATTGGTCGTGATAATTTTATGTGTATTTCAATTACTTTTTCCTATT
		+	ATTTATTTTATTTTGTTTGTTCTTTAGTGAATATGCATAGGCCAAGGCTTAGGCCTGATG
		+	GTAGCAATGGATCTGATTATATTAACGCAAGCTTTGTTGACGTAAGTACGGGAATTTTGT
		+	ATTGATTAGGTGTTTATCTAAATCTCTTTTTCCTGCCATTATATCTGTCT

@@ Line 1: / Line 1: @@
 ==== AqueP098 is not identical to AqueP099 ====
-The protein sequences are identical. BLAST against sponge proteins in [http://metazoa.ensembl.org/Amphimedon_queenslandica/Tools/Blast/Results?db=core;tl=3PVs6PGqxAp2FklL-2091222 ensemblgenomes.org]. Find two hits, the second one is AqueP099.
+ The protein sequences are identical. BLAST against sponge proteins in [http://metazoa.ensembl.org/Amphimedon_queenslandica/Tools/Blast/Results?db=core;tl=3PVs6PGqxAp2FklL-2091222 ensemblgenomes.org]. Find two hits, the second one is AqueP099.
 Subject name	Subject description	Gene hit	Genomic Location	Orientation	Length	Score	E-val	%ID
@@ Line 9: / Line 9: @@
 PAC:15710924		Aqu1.212396	Contig12991:41253-43106 [Sequence]	Reverse	189 [Sequence]	991	5.3E-130	100.0 [Alignment]
-But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical.
+ But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical.
 Genomic Location	Overlapping Gene(s)	Orientation	Length	Score	E-val	%ID