Mark: Created page with "SpurP037 (91 aa) and part of SpurP38 (549 aa) are identical in protein sequence. To find out whether they are encoded by the same gene or not: 1. BLAT the two protein sequenc..."

2015-09-29T21:29:06Z

Created page with "SpurP037 (91 aa) and part of SpurP38 (549 aa) are identical in protein sequence. To find out whether they are encoded by the same gene or not: 1. BLAT the two protein sequenc..."

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SpurP037 (91 aa) and part of SpurP38 (549 aa) are identical in protein sequence. To find out whether they are encoded by the same gene or not:

1. BLAT the two protein sequences in UCSC genome browser. The results show SpurP037 is mapped to Scaffold47560 and SpurP038 to Scaffold12751.

ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN
browser details SpurP037 272 1 91 91 100.0% Scaffold12751 +- 20747 21401 655

browser details SpurP037 272 1 91 91 100.0% Scaffold47560 ++ 472 1518 1047

browser details SpurP038 1630 1 549 549 100.0% Scaffold12751 +- 8771 23892 15122

browser details SpurP038 275 103 194 549 100.0% Scaffold47560 ++ 469 1518 1050

browser details SpurP038 170 433 489 549 100.0% Scaffold5692 +- 787 1557 771

browser details SpurP038 42 476 489 549 100.0% Scaffold12751 +- 10594 10635 42

2. BLAT the region Scaffold47560: 472-1518, which encodes SpurP037. The sequence identity of genomic sequence is 89.8%. Thus, SpurP037 (91 aa) and part of SpurP38 (549 aa) are two genes.

browser details strPur2_dna 1047 1 1047 1047 100.0% Scaffold47560 + 472 1518 1047

browser details strPur2_dna 487 1 1047 1047 89.8% Scaffold12751 - 20747 21401 655

>strPur2_dna range=Scaffold47560:472-1518 5'pad=0 3'pad=0 strand=+ repeatMasking=none
CCAGTGACACTGACCTACCCATTCTTCTACAGAAGTACCTTTGATGAACT
CGAGGATGGGTGGCATGCGTTCTTACCAGAGAATGAGTTTGCAAGGCTCG
CTAGTGATGACTGGAGAATCAGCTATGTTAACAAAAACTTCCAGGTATAT
AGCTTGGATCTCAAATTATATGTATCTGGCTCTCTGTCTCACCTCATTTT
TGTTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCA
ATCCATATGTGAGAATGAGTTTGCAAGGCTTGCCAGTAATGTCTGAAGAT
TTAGCTATGTTTCAAAAACTTCCAGGTATAGATCTCTGATCTTTCTGTTT
GTCTGTCTGTTTGTCTGTCTGTCTGTCTGTCTCTATGTTTTTGTTTTTAT
GTCTCTGTCTGAATCTCCCTCTGTCTCTCTCTGTCTCTGCCTCTGTCTCT
CTCTATTTCCTTACCGGAGAATGAGTTTGCAAGGCTCGCTAGTGATGACT
GGAGAATCAGCTGTGTTAACAAAAACTTCCAGGTATAGATCTCTTATCTT
TCTGTTTGTCTGTCTGTCTTTATGTCTGTCTCTGTCGTTGTCTCTTTTTT
GTCTCTGTCTCTCTTTCTCTCTTGTTTTGTCTCTTTGTCTTCATCTTTGA
AATTTTGTCTTTCTATCCAAATTTTCTATCTCTCTCTTCCTGTGTGTCTC
TGTCTCTCTGTCTCTCTTTCTCTGTTTCTCATTCTCTTTGTCTTTACTTT
GTGTCTTTCTACAAGTATCTCTCTAAGTTATATTTTCCTATCTCTGTCTG
TCTCTCACCCCCCTCTAGCTTCCTCTCCTCTGAAAAAGAAAAATACATTT
GTGTGCACATACAATTTCATGTACCTGTACCTGTAATGTCCTCTTTTTGT
CTGACCATTGTCCCTCAGGTATGTCCAAGCTACCCTCCAGCAGTGATAGT
GCCCAAGTCCATAGATGATGACACACTGGTTCAGTCCGCTGCATTCCGCT
ATGGAGGGAGGTTCCCTATACTCAGCTATATGCACACTGCACAAAAG

Phosphatase GeneID SpurP037 - Revision history

Mark: Created page with "SpurP037 (91 aa) and part of SpurP38 (549 aa) are identical in protein sequence. To find out whether they are encoded by the same gene or not: 1. BLAT the two protein sequenc..."