Phosphatase GeneID SpurP054 - Revision history

Mark at 17:10, 10 May 2016

2016-05-10T17:10:06Z

Mark at 18:41, 5 October 2015

2015-10-05T18:41:59Z

Mark: Created page with "Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence (by BLAT in UCSC genome browser, assembly Baylor 2.1). It is therefore ..."

2015-10-05T18:40:04Z

Created page with "Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence (by BLAT in UCSC genome browser, assembly Baylor 2.1). It is therefore ..."

New page

Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence (by BLAT in UCSC genome browser, assembly Baylor 2.1). It is therefore a real gene.

← Older revision		Revision as of 17:10, 10 May 2016
Line 1:		Line 1:
−	Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence. The closest sequence is SpurP111, which is 92% identity in protein sequence. By BLATing purple sea urchin genome at UCSC genome browser (assembly Baylor 2.1), it is distinct from SpurP111 in genomic sequence. It is therefore a ~~real gene~~.	+	A pseudogene probably originates from SpurP111.
		+
		+	Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence. The closest sequence is SpurP111, which is 92% identity in protein sequence. By BLATing purple sea urchin genome at UCSC genome browser (assembly Baylor 2.1), it is distinct from SpurP111 in genomic sequence. It is therefore a locus different from SpurP111.
		+
		+	It has a sequence as below:
		+
		+	>Spur_SpurPTP-Un-4 id=SpurP054_AA CC1:CC1:PTP:PTP-unclassified [Strongylocentrotus purpuratus]
		+	NCSAGVGRTGTFITINCMIEMIEADEKIDVFNFINEMR
		+
		+	But, it can be extended in genomic sequence:
		+
		+	>Extended
		+	NCSAGVGRTGTFITINCMIEMIEADEKIDVFNFINEMR*RIAFMVQVQVIY
		+
		+	This is now a pseudogene, so I suggest it be classified as a pseudogene and as PTPRB-like.

← Older revision		Revision as of 18:41, 5 October 2015
Line 1:		Line 1:
−	Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence ~~(by BLAT~~ in UCSC genome browser, assembly Baylor 2.1). It is therefore a real gene.	+	Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence. The closest sequence is SpurP111, which is 92% identity in protein sequence. By BLATing purple sea urchin genome at UCSC genome browser (assembly Baylor 2.1), it is distinct from SpurP111 in genomic sequence. It is therefore a real gene.