Difference between revisions of "Phosphatase GeneID SpurP124"
(Created page with "SpurP124, SpurP125, SpurP126 are partially identical in protein sequence. To find out whether they are encoded by different genes: 1. BLAT the three sequences. SpurP124 is en...") |
|||
| Line 1: | Line 1: | ||
| − | SpurP124, SpurP125, SpurP126 are partially identical in protein sequence. To find out whether they are encoded by different genes: | + | SpurP124, SpurP125, SpurP126, Spur200 are partially identical in protein sequence. To find out whether they are encoded by different genes: |
| − | 1. BLAT the three sequences. SpurP124 is encoded by Scaffold67922 | + | 1. BLAT the three sequences. SpurP124 is encoded by Scaffold67922; SpurP125 is encoded by Scaffold20002; SpurP126 is encoded by Scaffold86115; SpurP200 is encoded by Scaffold52488. |
Below are BLAT results: | Below are BLAT results: | ||
| Line 23: | Line 23: | ||
browser details SpurP126 302 95 197 601 99.1% Scaffold33476 ++ 582 1307 726 | browser details SpurP126 302 95 197 601 99.1% Scaffold33476 ++ 582 1307 726 | ||
| + | |||
| + | browser details SpurP200 931 1 311 311 100.0% Scaffold52488 ++ 158719 162177 3459 | ||
| + | |||
| + | browser details SpurP200 919 1 311 311 99.4% Scaffold67922 +- 2504 5486 2983 | ||
2. Then, we obtained the genomic sequences and BLAT them. | 2. Then, we obtained the genomic sequences and BLAT them. | ||
Revision as of 22:24, 29 September 2015
SpurP124, SpurP125, SpurP126, Spur200 are partially identical in protein sequence. To find out whether they are encoded by different genes:
1. BLAT the three sequences. SpurP124 is encoded by Scaffold67922; SpurP125 is encoded by Scaffold20002; SpurP126 is encoded by Scaffold86115; SpurP200 is encoded by Scaffold52488.
Below are BLAT results:
ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN browser details SpurP124 925 1 309 448 100.0% Scaffold67922 +- 2510 5486 2977
browser details SpurP124 913 1 309 448 99.4% Scaffold52488 ++ 158719 162171 3453
browser details SpurP124 412 311 448 448 100.0% Scaffold86115 +- 132767 134495 1729
browser details SpurP124 412 311 448 448 100.0% Scaffold20002 ++ 4106 5826 1721
browser details SpurP125 415 1 139 139 100.0% Scaffold86115 +- 132767 134498 1732
browser details SpurP125 415 1 139 139 100.0% Scaffold20002 ++ 4103 5826 1724
browser details SpurP126 1752 10 601 601 99.8% Scaffold86115 +- 132767 227975 95209
browser details SpurP126 415 463 601 601 100.0% Scaffold20002 ++ 4103 5826 1724
browser details SpurP126 302 95 197 601 99.1% Scaffold33476 ++ 582 1307 726
browser details SpurP200 931 1 311 311 100.0% Scaffold52488 ++ 158719 162177 3459
browser details SpurP200 919 1 311 311 99.4% Scaffold67922 +- 2504 5486 2983
2. Then, we obtained the genomic sequences and BLAT them.
