Difference between revisions of "Phosphatase GeneID AqueP098"
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==== AqueP098 is not identical to AqueP099 ==== | ==== AqueP098 is not identical to AqueP099 ==== | ||
| − | The protein sequences are identical. BLAST against sponge proteins in [http://metazoa.ensembl.org/Amphimedon_queenslandica/Tools/Blast/Results?db=core;tl=3PVs6PGqxAp2FklL-2091222 ensemblgenomes.org]. Find two hits, the second one is AqueP099. | + | The protein sequences are identical. BLAST against sponge proteins in [http://metazoa.ensembl.org/Amphimedon_queenslandica/Tools/Blast/Results?db=core;tl=3PVs6PGqxAp2FklL-2091222 ensemblgenomes.org]. Find two hits, the second one is AqueP099. |
Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID | Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID | ||
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PAC:15710924 Aqu1.212396 Contig12991:41253-43106 [Sequence] Reverse 189 [Sequence] 991 5.3E-130 100.0 [Alignment] | PAC:15710924 Aqu1.212396 Contig12991:41253-43106 [Sequence] Reverse 189 [Sequence] 991 5.3E-130 100.0 [Alignment] | ||
| − | But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical. | + | But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical. |
Genomic Location Overlapping Gene(s) Orientation Length Score E-val %ID | Genomic Location Overlapping Gene(s) Orientation Length Score E-val %ID | ||
Latest revision as of 18:52, 30 September 2015
AqueP098 is not identical to AqueP099
The protein sequences are identical. BLAST against sponge proteins in ensemblgenomes.org. Find two hits, the second one is AqueP099.
Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID
PAC:15701411 Aqu1.202883 Contig6625:2-1862 [Sequence] Forward 196 [Sequence] 1025 1.0E-134 100.0 [Alignment ] PAC:15710924 Aqu1.212396 Contig12991:41253-43106 [Sequence] Reverse 189 [Sequence] 991 5.3E-130 100.0 [Alignment]
But genomic sequence are not identical. BLASTN Contig6625 against sponge genome. They are not identical.
Genomic Location Overlapping Gene(s) Orientation Length Score E-val %ID Contig6625:1-1910 [Sequence] Aqu1.202883 Forward 1910 [Sequence] 1910 0.0 100.0 [Alignment] Contig12991:42040-42533 [Sequence] Aqu1.212396 Reverse 494 [Sequence] 422 0.0 96.4 [Alignment] Contig12991:41184-41671 [Sequence] Aqu1.212396 Reverse 488 [Sequence] 408 0.0 95.9 [Alignment] Contig12991:42826-43107 [Sequence] Aqu1.212396 Reverse 282 [Sequence] 246 3.5E-136 96.8 [Alignment] Contig12991:41753-41978 [Sequence] Aqu1.212396 Reverse 226 [Sequence] 182 5.5E-98 95.1 [Alignment]
>Contig6625 dna:scaffold scaffold:Aqu1:Contig6625:1:1910:1 GCCCGATCACGGAGTACCACAATTTGCCACTTCGCTCATTAGCTTCATCAAGCGAGTACA AAAAGATCACAACAAAGATAAAGGCGTGCCACTCATGGTCCACTGCAGTGCTGGTGTGGG TCGTACTGGCACCTTTATCATGCTGGATATAATGATGGACAGATTGAAACAAGAGGAGTC CATTAATGTGTATGAGGTACTGAGGCAGTTGAGATCAAAGAGAATGTACATGGTTCAAAC ACAGGTTAGTGTATATAAGAAATACATGTACATTTATCATTTACATGTACATGCATCTTC ACTTGTATGTGTGTTAACGATAAAACAAAACTATACCACTTTTTGTTTAGTTATACTAAT ACATGTACGTGTGCCATTTACATGTATATATAGTTCATGTTTTTACTAGTCAATGCTTAT AAATCCTTTTCGATTTGTGAAAACATTGTAACCCACTTGCTAATTTCAAATTTTTAAGTT ATGAACATTTAATTGACTTTTGATTACCTGTGTGTACTCTTCTGTCAAAAATTCTTACAA AAGAATTTAAAATTTTATGTATGTACATGTATCTTGCATATATTTATATATAATAATTAA TCTTTTTTATTTTATTATTCATAGGCCCAGTATGTGTTCCTTCATGATGCTTTGGATGAG TTGACCACTTGTGGTGATACTTCGATAATTGGATCCAACCTGAGAGCTCGTGTCAACAAA ATGCACAAGATGATTCCAGGAAAGAACATAACTGGATTCCAGGAGCAATATGAGGTATAT ACATGTAGGGATTAGGGAATCAGTAACTGTATAGCTGGATACTATTAGGTTATACTGTAT AGTCATTTAATTTGACAGAGACAGCTGGGGATTTTTGGATTACATTTTCAATATTAAATC ATTGAAGTGCATGTGTACAGAAATTAGTGGGTTTTATAGAAATATGGCACCGCCAAATTA AAGTACCATGTTTTTCCTTGTTTTGGGATGTATGTAGTACTAATTTAGAAACCACAAGCT TGCAGGGTTTCCCACAAAGCAAACTTCAGCACTATAGTATGTGTACATTGTGGCATTTGG AGCAAAGTATTTTTTAAAATTCATTTAAAAAATCCAATTTTGATCGAAATCAACTCAAAC TTGCTACACAACATAAAAACATGTATATGTATTAGAAAAAATTATAAAAATGGAGAATTC TTTCCTAGTCATTTTTGGCGAAATTTGGCCAAAGACCCTGTACTATAGTACAGGGTCTTT GGCCCGATTTCAGAGCAACTTTAAAAATTCGTAAAAAATCTAATTTTGATTTTAATTATC TCAAACTTTCTACGCAACATAAGAACATGTAAATGCATCAGAAAAAATTATAAAAATGAA AAATTTTCTCCTAGTCATTTTTGGCAAAATGCCTGTACTATAGTACAGGGTTTTTGGCCC AATTTAGTTGTACACATAAATATCATTGCATGACCATTTGCTGCATAATATAAGATTTTA CATAAGACTTTTAAGTCACACGATAATTTGTATTATAATATTTTGTCCCCTTGTAGTTAT TGGATCAGGTTGGATACAAACCCAGTGAAATGATGTACTCTGATGGTACTACTACTGTTA ATGTACCCAAGAACAGATACCCTGAAATTGTACCATGTAAGTACATACATGTAATACCAG AATAATACATATGTATTGGTCGTGATAATTTTATGTGTATTTCAATTACTTTTTCCTATT ATTTATTTTATTTTGTTTGTTCTTTAGTGAATATGCATAGGCCAAGGCTTAGGCCTGATG GTAGCAATGGATCTGATTATATTAACGCAAGCTTTGTTGACGTAAGTACGGGAATTTTGT ATTGATTAGGTGTTTATCTAAATCTCTTTTTCCTGCCATTATATCTGTCT
