Difference between revisions of "Phosphatase GeneID AqueP190"
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Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID | Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID | ||
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[http://metazoa.ensembl.org/Amphimedon_queenslandica/Transcript/ProteinSummary?db=core;t=PAC:15727266;tl=JdiA2GhhZjrYNili-2067004-41596578 PAC:15727266] [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.228738;tl=JdiA2GhhZjrYNili-2067004-41596578 Aqu1.228738] Contig13516:147880-150438 [Sequence] Forward 452 [Sequence] 2363 0.0 100.0 [Alignment] | [http://metazoa.ensembl.org/Amphimedon_queenslandica/Transcript/ProteinSummary?db=core;t=PAC:15727266;tl=JdiA2GhhZjrYNili-2067004-41596578 PAC:15727266] [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.228738;tl=JdiA2GhhZjrYNili-2067004-41596578 Aqu1.228738] Contig13516:147880-150438 [Sequence] Forward 452 [Sequence] 2363 0.0 100.0 [Alignment] | ||
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[http://metazoa.ensembl.org/Amphimedon_queenslandica/Transcript/ProteinSummary?db=core;t=PAC:15727267;tl=JdiA2GhhZjrYNili-2067004-41596577 PAC:15727267] [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.228739;tl=JdiA2GhhZjrYNili-2067004-41596577 Aqu1.228739] Contig13516:147880-150411 [Sequence] Forward 443 [Sequence] 2324 0.0 100.0 [Alignment] | [http://metazoa.ensembl.org/Amphimedon_queenslandica/Transcript/ProteinSummary?db=core;t=PAC:15727267;tl=JdiA2GhhZjrYNili-2067004-41596577 PAC:15727267] [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.228739;tl=JdiA2GhhZjrYNili-2067004-41596577 Aqu1.228739] Contig13516:147880-150411 [Sequence] Forward 443 [Sequence] 2324 0.0 100.0 [Alignment] | ||
Latest revision as of 18:20, 28 September 2015
The entry is obsolete, because it is mapped to the same chromosomal locus with AqueP189. By BLASTing the protein sequences from Ensemblgenomes.org:
Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID
PAC:15727266 Aqu1.228738 Contig13516:147880-150438 [Sequence] Forward 452 [Sequence] 2363 0.0 100.0 [Alignment]
PAC:15727267 Aqu1.228739 Contig13516:147880-150411 [Sequence] Forward 443 [Sequence] 2324 0.0 100.0 [Alignment]
The two transcripts PAC:15727266 and PAC:15727267 are identical, except the exon 17.
Exon 16 PAC:15727266-E16 150,241 150,303 1 1 63 Exon 17 PAC:15727266-E17 150,347 150,834 1 - 488
Exon 17: PAC:15727267-E17 150,347 150,411 1 0 65 Exon 18: PAC:15727267-E18 150,634 150,833
Our gene model is longer than both genes, which a longer C terminal.
