Difference between revisions of "HMM PD0133"
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(Created page with "Back to '''List of HMMs''' '''Symbol''': MTMR5_C1 '''Name''': MTMR5, C1 domain === Description === The MTMR5 has a C1 domain which is able to be detected by [http:/...") |
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=== Description === | === Description === | ||
| − | The MTMR5 has a C1 domain which is able to be detected by [http://pfam.xfam.org/family/PF00130 Pfam C1_1] profile in C1 clan. | + | The [[Phosphatase_Subfamily_MTMR5|MTMR5 subfamily]] has a C1 domain which is able to be detected by [http://pfam.xfam.org/family/PF00130 Pfam C1_1] profile in C1 clan. We try to build a HMM, which can detect the C1 domain of MTMR5. |
=== How the HMM is built === | === How the HMM is built === | ||
We PSI-BLASTed the sequence that containing the C1 domain in ''C. elegans'' mtm-5 (1540-1590 determined by searching the complete sequence against CDD and Pfam database). However, the search converged right after the 1st round. | We PSI-BLASTed the sequence that containing the C1 domain in ''C. elegans'' mtm-5 (1540-1590 determined by searching the complete sequence against CDD and Pfam database). However, the search converged right after the 1st round. | ||
Revision as of 18:04, 11 September 2015
Back to List of HMMs
Symbol: MTMR5_C1
Name: MTMR5, C1 domain
Description
The MTMR5 subfamily has a C1 domain which is able to be detected by Pfam C1_1 profile in C1 clan. We try to build a HMM, which can detect the C1 domain of MTMR5.
How the HMM is built
We PSI-BLASTed the sequence that containing the C1 domain in C. elegans mtm-5 (1540-1590 determined by searching the complete sequence against CDD and Pfam database). However, the search converged right after the 1st round.
