Difference between revisions of "Phosphatase GeneID AqueP190"

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(Created page with "The entry is obsoleted. It is mapped to the same chromosomal locus with AqueP189, i.e. they are encoded by the same gene. In the assembly of Ensemblgenomes.org, It is identic...")
 
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The entry is obsoleted. It is mapped to the same chromosomal locus with AqueP189, i.e. they are encoded by the same gene.
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The entry is obsolete, because it is mapped to the same chromosomal locus with AqueP189. By BLASTing the protein sequences from Ensemblgenomes.org:
  
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In the assembly of Ensemblgenomes.org, It is identical to the protein translated from the transcript PAC:15727266; AqueP189 is identical to the protein translated from the transcript PAC:15727267. The two transcripts are transcribed from the gene Aqu1.228738.
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Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID
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PAC:15727266 Aqu1.228738 Contig13516:147880-150438 [Sequence] Forward 452 [Sequence] 2363 0.0 100.0 [Alignment]
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PAC:15727267 Aqu1.228739 Contig13516:147880-150411 [Sequence] Forward 443 [Sequence] 2324 0.0 100.0 [Alignment]
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The two transcripts PAC:15727266 and PAC:15727267 are identical, except the exon 17.  
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Exon 16 PAC:15727266-E16 150,241 150,303 1 1 63                                                                            
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Exon 17 PAC:15727266-E17 150,347 150,834 1 - 488
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Exon 17: PAC:15727267-E17 150,347 150,411 1 0 65  
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Exon 18: PAC:15727267-E18  150,634 150,833
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Our gene model is longer than both genes, which a longer C terminal.

Revision as of 23:49, 27 September 2015

The entry is obsolete, because it is mapped to the same chromosomal locus with AqueP189. By BLASTing the protein sequences from Ensemblgenomes.org:

Subject name Subject description Gene hit Genomic Location Orientation Length Score E-val %ID PAC:15727266 Aqu1.228738 Contig13516:147880-150438 [Sequence] Forward 452 [Sequence] 2363 0.0 100.0 [Alignment] PAC:15727267 Aqu1.228739 Contig13516:147880-150411 [Sequence] Forward 443 [Sequence] 2324 0.0 100.0 [Alignment]

The two transcripts PAC:15727266 and PAC:15727267 are identical, except the exon 17.

Exon 16 PAC:15727266-E16 150,241 150,303 1 1 63 Exon 17 PAC:15727266-E17 150,347 150,834 1 - 488

Exon 17: PAC:15727267-E17 150,347 150,411 1 0 65 Exon 18: PAC:15727267-E18 150,634 150,833

Our gene model is longer than both genes, which a longer C terminal.

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