Difference between revisions of "Phosphatase GeneID SpurP054"
(Created page with "Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence (by BLAT in UCSC genome browser, assembly Baylor 2.1). It is therefore ...") |
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| − | Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence | + | A pseudogene probably originates from SpurP111. |
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| + | Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence. The closest sequence is SpurP111, which is 92% identity in protein sequence. By BLATing purple sea urchin genome at UCSC genome browser (assembly Baylor 2.1), it is distinct from SpurP111 in genomic sequence. It is therefore a locus different from SpurP111. | ||
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| + | It has a sequence as below: | ||
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| + | >Spur_SpurPTP-Un-4 id=SpurP054_AA CC1:CC1:PTP:PTP-unclassified [Strongylocentrotus purpuratus] | ||
| + | NCSAGVGRTGTFITINCMIEMIEADEKIDVFNFINEMR | ||
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| + | But, it can be extended in genomic sequence: | ||
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| + | >Extended | ||
| + | NCSAGVGRTGTFITINCMIEMIEADEKIDVFNFINEMR*RIAFMVQVQVIY | ||
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| + | This is now a pseudogene, so I suggest it be classified as a pseudogene and as PTPRB-like. | ||
Latest revision as of 17:10, 10 May 2016
A pseudogene probably originates from SpurP111.
Though SpurP054 is fragmentary, it is different from other phosphatases in protein and genomic sequence. The closest sequence is SpurP111, which is 92% identity in protein sequence. By BLATing purple sea urchin genome at UCSC genome browser (assembly Baylor 2.1), it is distinct from SpurP111 in genomic sequence. It is therefore a locus different from SpurP111.
It has a sequence as below:
>Spur_SpurPTP-Un-4 id=SpurP054_AA CC1:CC1:PTP:PTP-unclassified [Strongylocentrotus purpuratus] NCSAGVGRTGTFITINCMIEMIEADEKIDVFNFINEMR
But, it can be extended in genomic sequence:
>Extended NCSAGVGRTGTFITINCMIEMIEADEKIDVFNFINEMR*RIAFMVQVQVIY
This is now a pseudogene, so I suggest it be classified as a pseudogene and as PTPRB-like.
