Difference between revisions of "Phosphatase GeneID SpurP124"
(Created page with "SpurP124, SpurP125, SpurP126 are partially identical in protein sequence. To find out whether they are encoded by different genes: 1. BLAT the three sequences. SpurP124 is en...") |
|||
| (3 intermediate revisions by one user not shown) | |||
| Line 1: | Line 1: | ||
| − | SpurP124 | + | SpurP124 locates in short contig and its sequence is incomplete. |
| − | + | SpurP124, SpurP125, SpurP126, Spur200 are partially identical in protein sequence. To find out whether they are encoded by different genes: | |
| + | |||
| + | BLAT the four sequences. SpurP124 is encoded by Scaffold67922 + Scaffold86115/Scaffold20002; SpurP125 is encoded by Scaffold86115/Scaffold20002; SpurP126 is encoded by Scaffold86115; SpurP200 is encoded by Scaffold52488. | ||
Below are BLAT results: | Below are BLAT results: | ||
| − | ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN | + | ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN |
| − | browser details SpurP124 925 1 309 448 100.0% Scaffold67922 +- 2510 5486 2977 | + | |
| + | browser details SpurP124 925 1 309 448 100.0% Scaffold67922 +- 2510 5486 2977 | ||
browser details SpurP124 913 1 309 448 99.4% Scaffold52488 ++ 158719 162171 3453 | browser details SpurP124 913 1 309 448 99.4% Scaffold52488 ++ 158719 162171 3453 | ||
| Line 24: | Line 27: | ||
browser details SpurP126 302 95 197 601 99.1% Scaffold33476 ++ 582 1307 726 | browser details SpurP126 302 95 197 601 99.1% Scaffold33476 ++ 582 1307 726 | ||
| − | 2. | + | browser details SpurP200 931 1 311 311 100.0% Scaffold52488 ++ 158719 162177 3459 * |
| + | |||
| + | browser details SpurP200 919 1 311 311 99.4% Scaffold67922 +- 2504 5486 2983 | ||
| + | |||
| + | 2. To find out whether Scaffold86115 and Scaffold20002 are identical, BLAT Scaffold86115: 132767-134498. They have slight differences: | ||
| + | |||
| + | ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN | ||
| + | |||
| + | browser details strPur2_dna 1732 1 1732 1732 100.0% Scaffold86115 + 132767 134498 1732 | ||
| + | |||
| + | browser details strPur2_dna 1710 1 1732 1732 99.2% Scaffold20002 - 4103 5826 1724 | ||
Latest revision as of 19:37, 6 October 2015
SpurP124 locates in short contig and its sequence is incomplete.
SpurP124, SpurP125, SpurP126, Spur200 are partially identical in protein sequence. To find out whether they are encoded by different genes:
BLAT the four sequences. SpurP124 is encoded by Scaffold67922 + Scaffold86115/Scaffold20002; SpurP125 is encoded by Scaffold86115/Scaffold20002; SpurP126 is encoded by Scaffold86115; SpurP200 is encoded by Scaffold52488.
Below are BLAT results:
ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN
browser details SpurP124 925 1 309 448 100.0% Scaffold67922 +- 2510 5486 2977
browser details SpurP124 913 1 309 448 99.4% Scaffold52488 ++ 158719 162171 3453
browser details SpurP124 412 311 448 448 100.0% Scaffold86115 +- 132767 134495 1729
browser details SpurP124 412 311 448 448 100.0% Scaffold20002 ++ 4106 5826 1721
browser details SpurP125 415 1 139 139 100.0% Scaffold86115 +- 132767 134498 1732
browser details SpurP125 415 1 139 139 100.0% Scaffold20002 ++ 4103 5826 1724
browser details SpurP126 1752 10 601 601 99.8% Scaffold86115 +- 132767 227975 95209
browser details SpurP126 415 463 601 601 100.0% Scaffold20002 ++ 4103 5826 1724
browser details SpurP126 302 95 197 601 99.1% Scaffold33476 ++ 582 1307 726
browser details SpurP200 931 1 311 311 100.0% Scaffold52488 ++ 158719 162177 3459 *
browser details SpurP200 919 1 311 311 99.4% Scaffold67922 +- 2504 5486 2983
2. To find out whether Scaffold86115 and Scaffold20002 are identical, BLAT Scaffold86115: 132767-134498. They have slight differences:
ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN
browser details strPur2_dna 1732 1 1732 1732 100.0% Scaffold86115 + 132767 134498 1732
browser details strPur2_dna 1710 1 1732 1732 99.2% Scaffold20002 - 4103 5826 1724
