Gene RTR1-1 in Nematostella vectensis

Gene expression:

Classification

Phosphatases were first clustered by sequence similarity in the phosphatase domain, and additional information from domains outside of the catalytic domain, from evolutionary conservation, and from known functions was added. The result is a hybrid classification, in which no criterion is universally satisfied, but aims to be of practical use to a range of phosphatase interests. The classification grows as new phosphatomes are sequenced.

Level Class Gene list Wiki page
Fold RTR1
Superfamily RTR1
Family RTR1
Subfamily RTR1
Protein sequence
ID Type Fasta BLAST phosphatome Note
NvecP154_AA protein Get Run
NvecP154_AA_110-166 phosphatase_domain Get Run
Domains
Summary
Details
Domain Domain Description Range Significance Score Source Profile Range (length) Alignment
subfamily_RTR1_pd Subfamily RTR1 112-167 2.1e-27 85.0 In-house 1-56 (74) alignment 
Range on Protein: 112-167
Range on HMM: 1-56/74.0
NYITHRHYSDVVTERFIIKICGYPLCPKSLTNIPKQTFKISTRTNRVYDITERKDR
...|..||||||.||.| |.||||||.|||..|.||.|||||....||||||||. 
rlltpdhysdvveeRsinkrCGYPlCskslekiakqkfkistkekkvyditerkkf
RPAP2_Rtr1 Rtr1/RPAP2 family 111-166 8e-19 57.4 Pfam-A 2-58 (79) alignment 
Range on Protein: 111-166
Range on HMM: 2-58/79.0
GNYITHRHYSDVVTERFIIKICGYPLCPKSLTNIP-KQTFKISTRTNRVYDITERKD
 ...|...|.|||.|| | | ||||||..||.| . ||.|.||.....||.......
lrlltkstyrdvveERninklCGYplCsnslknasgkqrfeisskekkvyeredeee
RPAP2_Rtr1 Rtr1/RPAP2 family 111-166 8e-19 57.4 In-house 2-58 (79) alignment 
Range on Protein: 111-166
Range on HMM: 2-58/79.0
GNYITHRHYSDVVTERFIIKICGYPLCPKSLTNIP-KQTFKISTRTNRVYDITERKD
 ...|...|.|||.|| | | ||||||..||.| . ||.|.||.....||.......
lrlltkstyrdvveERninklCGYplCsnslknasgkqrfeisskekkvyeredeee