Gene RTR1 in Saccharomyces cerevisiae

Synonym: YER139C, RTR1

Gene expression:

Classification

Phosphatases were first clustered by sequence similarity in the phosphatase domain, and additional information from domains outside of the catalytic domain, from evolutionary conservation, and from known functions was added. The result is a hybrid classification, in which no criterion is universally satisfied, but aims to be of practical use to a range of phosphatase interests. The classification grows as new phosphatomes are sequenced.

Level Class Gene list Wiki page
Fold RTR1
Superfamily RTR1
Family RTR1
Subfamily RTR1
Protein sequence
ID Type Fasta BLAST phosphatome Note
ScerP026_AA protein Get Run
ScerP026_AA_51-128 phosphatase_domain Get Run
Domains
Summary
Details
Domain Domain Description Range Significance Score Source Profile Range (length) Alignment
subfamily_RTR1_pd Subfamily RTR1 53-129 1.3e-30 95.2 In-house 1-74 (74) alignment 
Range on Protein: 53-129
Range on HMM: 1-74/74.0
RFLTPDMYQDLVDERNLNKRCGYPLCGKSPERI-RDPFSMNDTTKKFllennpY--AYLSHYCSKFHFRCSQFYQVQLSD
|.||||.|.|.|.||..||||||||| ||.|.| ...|......||.      |  ......|||.....|.||..|||.
rlltpdhysdvveeRsinkrCGYPlCskslekiakqkfkistkekkv......yditerkkfCskecykaskfyrsqlse
RPAP2_Rtr1 Rtr1/RPAP2 family 52-128 8.4e-24 73.4 Pfam-A 2-78 (79) alignment 
Range on Protein: 52-128
Range on HMM: 2-78/79.0
GRFLTPDMYQDLVDERNLNKRCGYPLCGKSPERI--RDPFSMNDTTKKFLLEN-NPYAylsHYCSKFHFRCSQFYQVQLS
 |.||.  |.|.|.|||.||.|||||| .|...   .. |... ..|| . .. . .    ..|||.....|.....|||
lrlltkstyrdvveERninklCGYplCsnslknasgkqrfeisskekkvyeredeeee...kFCSkaCaeaslalraqls
RPAP2_Rtr1 Rtr1/RPAP2 family 52-128 8.4e-24 73.4 In-house 2-78 (79) alignment 
Range on Protein: 52-128
Range on HMM: 2-78/79.0
GRFLTPDMYQDLVDERNLNKRCGYPLCGKSPERI--RDPFSMNDTTKKFLLEN-NPYAylsHYCSKFHFRCSQFYQVQLS
 |.||.  |.|.|.|||.||.|||||| .|...   .. |... ..|| . .. . .    ..|||.....|.....|||
lrlltkstyrdvveERninklCGYplCsnslknasgkqrfeisskekkvyeredeeee...kFCSkaCaeaslalraqls