Difference between revisions of "Phosphatome Computational Tools and Resources"
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===== PTP.cshl ===== | ===== PTP.cshl ===== | ||
[http://ptp.cshl.edu/ PTP.cshl] focuses on protein tyrosine phosphatases. It was launched in 2011 and provided a most complete census on human protein tyrosine phosphatases <cite>andersen-2001</cite>. However, the content of the web site seems not updated since 2005. | [http://ptp.cshl.edu/ PTP.cshl] focuses on protein tyrosine phosphatases. It was launched in 2011 and provided a most complete census on human protein tyrosine phosphatases <cite>andersen-2001</cite>. However, the content of the web site seems not updated since 2005. | ||
| + | |||
| + | ===== PhosphaBase ===== | ||
| + | [http://www.bioinf.manchester.ac.uk/phosphabase/index.html PhosphaBase] (PhB) is a database of protein phosphatases and contains information about their protein sequences <cite>phosphabase04</cite>. It is not updated any more, though. | ||
===== DEPOD ===== | ===== DEPOD ===== | ||
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#andersen-2001 pmid=11585896 | #andersen-2001 pmid=11585896 | ||
#alonso04 pmid=15186772 | #alonso04 pmid=15186772 | ||
| + | #phosphabase04 pmid=15558746 | ||
</biblio> | </biblio> | ||
Revision as of 19:38, 4 June 2014
Contents
PTP.cshl
PTP.cshl focuses on protein tyrosine phosphatases. It was launched in 2011 and provided a most complete census on human protein tyrosine phosphatases [1]. However, the content of the web site seems not updated since 2005.
PhosphaBase
PhosphaBase (PhB) is a database of protein phosphatases and contains information about their protein sequences [2]. It is not updated any more, though.
DEPOD
HuPho
PTP-central
PTP-central focuses on protein tyrosine phosphatases. It uses the same classification schema as the landmark work of Alonso et al. [3]. It comes with a tool (Y-Phosphatomer) to scan protein tyrosine phosphatases from genomes, and updated the total number of human protein tyrosine phosphatase to 109 [4].
GeneNet™ Phosphatase shRNA Library
GeneNet™ Phosphatase shRNA Library provides a list of 244 phosphatases, but some genes on the list are probably not phosphatases, such as discs and speedy homolog A, SIRPA and etc.
References
Error fetching PMID 11585896:
Error fetching PMID 15186772:
Error fetching PMID 15558746:
- Error fetching PMID 11585896:
- Error fetching PMID 15558746:
- Error fetching PMID 15186772:
- Error fetching PMID 23911837:
