Difference between revisions of "Phosphatase Fold CC1"
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We carried out structural alignment analysis of the crystal structures of five phosphatases of different families (Paladin and OCA has no structure), including human DUSP3 (DSP), PTEN (PTEN), PTPN1 (PTP), MTMR2 (myotubularin) and yeast Sac1p (Sac) (family names in parentheses). We compared the secondary structures and identified the common and family-specific secondary structures (SSs). | We carried out structural alignment analysis of the crystal structures of five phosphatases of different families (Paladin and OCA has no structure), including human DUSP3 (DSP), PTEN (PTEN), PTPN1 (PTP), MTMR2 (myotubularin) and yeast Sac1p (Sac) (family names in parentheses). We compared the secondary structures and identified the common and family-specific secondary structures (SSs). | ||
| − | All | + | All the five phosphatases share the same SSs combination of BBHBBHBHHH (B - sheet, H - helix). The phosphatases have different N-terminal SSs. All phosphatases ends at the same SS, helix 5 (H5), except MTMR2, which has additional 4 helices at C terminus. The sheets and helices are inserted at: |
* B2-H1: Sac1p | * B2-H1: Sac1p | ||
* H1-B3: MTMR2 | * H1-B3: MTMR2 | ||
| Line 14: | Line 14: | ||
* H3-H4: MTMR2 | * H3-H4: MTMR2 | ||
| − | + | We are uncertain about whether Sac1p has helix 5, because the region is not included in the available crystal structures (3LWT and 4TU3). | |
Revision as of 20:42, 28 October 2015
Phosphatase Classification: Fold CC1
Fold CC1 has a single superfamily CC1.
Comparing the secondary structure across families
We carried out structural alignment analysis of the crystal structures of five phosphatases of different families (Paladin and OCA has no structure), including human DUSP3 (DSP), PTEN (PTEN), PTPN1 (PTP), MTMR2 (myotubularin) and yeast Sac1p (Sac) (family names in parentheses). We compared the secondary structures and identified the common and family-specific secondary structures (SSs).
All the five phosphatases share the same SSs combination of BBHBBHBHHH (B - sheet, H - helix). The phosphatases have different N-terminal SSs. All phosphatases ends at the same SS, helix 5 (H5), except MTMR2, which has additional 4 helices at C terminus. The sheets and helices are inserted at:
- B2-H1: Sac1p
- H1-B3: MTMR2
- B3-B4: PTPN1, MTMR2, Sac1p
- B4-H2: PTPN1, MTMR2
- H2-B5: Sac1p
- H3-H4: MTMR2
We are uncertain about whether Sac1p has helix 5, because the region is not included in the available crystal structures (3LWT and 4TU3).
