Difference between revisions of "Phosphatase classification"
From PhosphataseWiki
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(→Classification Chart of Protein Phosphatases) |
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|bgcolor="#ffffff" rowspan="1" |[[Phosphatase_Fold_PHP|PHP]]||bgcolor="#ffffff" rowspan="1" |[[Phosphatase_Superfamily_PHP|PHP]]|| bgcolor="#ffffff" colspan="1" |[[Phosphatase_Family_PHP|PHP]]|| bgcolor="#ffffff" colspan="1" | pHis || bgcolor="#ffffff" colspan="1" | Yes | |bgcolor="#ffffff" rowspan="1" |[[Phosphatase_Fold_PHP|PHP]]||bgcolor="#ffffff" rowspan="1" |[[Phosphatase_Superfamily_PHP|PHP]]|| bgcolor="#ffffff" colspan="1" |[[Phosphatase_Family_PHP|PHP]]|| bgcolor="#ffffff" colspan="1" | pHis || bgcolor="#ffffff" colspan="1" | Yes | ||
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| − | |bgcolor="#ffffff" rowspan="1" |[[Phosphatase_Fold_RTR1|RTR1]]||bgcolor="#ffffff" rowspan="1" |[[Phosphatase_Superfamily_RTR1|RTR1]]|| bgcolor="#ffffff" colspan="1" |[[Phosphatase_Family_RTR1|RTR1]]|| bgcolor="#ffffff" colspan="1" | pSer || bgcolor="#ffffff" colspan="1" | Yes | + | |bgcolor="#ffffff" rowspan="1" |[[Phosphatase_Fold_RTR1|RTR1]]||bgcolor="#ffffff" rowspan="1" |[[Phosphatase_Superfamily_RTR1|RTR1]]|| bgcolor="#ffffff" colspan="1" |[[Phosphatase_Family_RTR1|RTR1]]|| bgcolor="#ffffff" colspan="1" | pSer of CTD repeats || bgcolor="#ffffff" colspan="1" | Yes |
|} | |} | ||
| − | Abbreviations: CC1, Cysteine-based Class I; CC2, Cysteine-based Class II; CC3, Cysteine-based Class III; MTDP, MeTallo-Dependent Phosphatase; PAP, Purple Acid Phosphatase; AP, Alkaline Phosphatase; HP, Histidine Phosphatase. | + | Abbreviations: CC1, Cysteine-based Class I; CC2, Cysteine-based Class II; CC3, Cysteine-based Class III; MTDP, MeTallo-Dependent Phosphatase; PAP, Purple Acid Phosphatase; AP, Alkaline Phosphatase; HP, Histidine Phosphatase; CTD, RNA Poly II C-Terminal Domain. |
== [[Non-protein_phosphatases|Non-protein phosphatases]] == | == [[Non-protein_phosphatases|Non-protein phosphatases]] == | ||
== [[Other_Classification_Schemes|Other Classification Schemes]] == | == [[Other_Classification_Schemes|Other Classification Schemes]] == | ||
Revision as of 16:29, 2 June 2015
Phosphatases were first clustered by sequence similarity in the phosphatase domain, and additional information from domains outside of the catalytic domain, from evolutionary conservation, and from known functions was added. The result is a hybrid classification, in which no criterion is universally satisfied, but aims to be of practical use to a range of phosphatase interests. The classification grows as new phosphatomes are sequenced.
Classification Chart of Protein Phosphatases
| Fold | Superfamily | Family | Substrate | Present in human |
|---|---|---|---|---|
| CC1 | CC1 | PTP | pTyr | Yes |
| DSP | pTyr, pSer/pThr, small molecule | Yes | ||
| PTEN | lipid | Yes | ||
| Myotubularin | lipid | Yes | ||
| SAC | lipid | Yes | ||
| Paladin | inactive | Yes | ||
| OCA | ? | No | ||
| CC2 | CC2 | LMWPTP | pTyr | Yes |
| SSU72 | pSer | Yes | ||
| ArsC | Arsenate | No | ||
| CC3 | CC3/Rhodanese | CDC25 | pTyr, pThr | Yes |
| HAD | HAD | EYA | pTyr | Yes |
| FCP | pSer | Yes | ||
| NagD | pTyr, pSer | Yes | ||
| MTDP | MTDP | PPP | pSer/pThr | Yes |
| PAP | ? | Yes | ||
| PPM/PP2C | PPM/PP2C | PPM/PP2C | pSer/pThr | Yes |
| AP | AP | AP | pTyr, perhaps pSer/pThr | Yes |
| HP | HP | HP, branch 1 | pTyr, pSer/pThr | Yes |
| HP, branch 2 | pTyr | Yes | ||
| PHP | PHP | PHP | pHis | Yes |
| RTR1 | RTR1 | RTR1 | pSer of CTD repeats | Yes |
Abbreviations: CC1, Cysteine-based Class I; CC2, Cysteine-based Class II; CC3, Cysteine-based Class III; MTDP, MeTallo-Dependent Phosphatase; PAP, Purple Acid Phosphatase; AP, Alkaline Phosphatase; HP, Histidine Phosphatase; CTD, RNA Poly II C-Terminal Domain.
